Fkolpakov@gmail.com at 15:05, 10 January 2015

2015-01-10T15:05:33Z

Fkolpakov@gmail.com: Created page with "The model repositories are resources where modelers can collaborate with each other to build and share models with the rest of the world. Biological model repositories allows..."

2015-01-10T15:00:36Z

Created page with "The model repositories are resources where modelers can collaborate with each other to build and share models with the rest of the world. Biological model repositories allows..."

New page

The model repositories are resources where modelers can collaborate with each other to build and share models with the rest of the world.

Biological model repositories allows:
* to reproduce published mathematical models of biological systems
* reuse them as building blocks for modular construction of more complex models.

{| class="wikitable"
!Repository, URL, references!!Number of models, format!!Brief description
|-
|
|
|

|-
|CellML model repository <cite>Lloyd2008</cite>
http://models.cellml.org
|500+
CellML
|The CellML Model Repository provides free access to 500+ biological models. The vast majority of these models are derived from published, peer-reviewed papers. Model curation is an important and ongoing process to ensure the CellML model is able to accurately reproduce the published results.

|-
|Physiome Repository <cite>Yu2011</cite>
https://models.physiomeproject.org
|500+
CellML, FieldML
|The Auckland Physiome Repository provides extensive support for CellML model and related files. Previously it was called the CellML Model Repository, this has since been merged completely along with the FieldML Model Repository into the unified repository. The underlying software is PMR2, which in turn relies on the distributed version control system Mercurial (Hg), which allows the repository to maintain a complete history of all changes made to every file it contains.

|-
|
|
|

|}

==References==

<biblio>
#Yu2011 pmid=21216774

#Lloyd2008 pmid=18658182

</biblio>

[[Category:Virtual_biology]]

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-The model repositories are resources where modelers can collaborate with each other to build and share models with the rest of the world.
+Building repositories of computational models of biological systems ensures that published models are available for both education and further research, and can provide a source of smaller, previously verified models to integrate into a larger model <cite>Miller2011</cite>.
-−
-Biological model repositories allows:
-* to reproduce published mathematical models of biological systems
-* reuse them as building blocks for modular construction of more complex models.
 {| class="wikitable"
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 |-
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 <biblio>
 #Yu2011 pmid=21216774

Category:Model repositories - Revision history

Fkolpakov@gmail.com at 15:05, 10 January 2015

Fkolpakov@gmail.com: Created page with "The model repositories are resources where modelers can collaborate with each other to build and share models with the rest of the world. Biological model repositories allows..."