https://wiki.biouml.org/index.php?action=history&feed=atom&title=Bsa_%28host_object%29 2026-04-13T03:33:10Z Revision history for this page on the wiki MediaWiki 1.20.3 https://wiki.biouml.org/index.php?title=Bsa_(host_object)&diff=7824&oldid=prev 2019-03-12T09:34:24Z

<p>Automatic synchronization with BioUML</p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 09:34, 12 March 2019</td> </tr><tr><td colspan="2" class="diff-lineno">Line 25:</td> <td colspan="2" class="diff-lineno">Line 25:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Track '''siteSearch'''(DataCollection sequences, DataCollection profile, Track intervals, String outputPath)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Track '''siteSearch'''(DataCollection sequences, DataCollection profile, Track intervals, String outputPath)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* TableDataCollection '''siteSearchSummary'''(Track yesTrack, Track noTrack, boolean overrepresentedOnly, String outputPath)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* TableDataCollection '''siteSearchSummary'''(Track yesTrack, Track noTrack, boolean overrepresentedOnly, String outputPath)</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">* void '''snpListToTrack'''(DataCollection source, String species, int fivePrimeSize, int threePrimeSize, boolean outputNonMatched, String outputPath, String annotatedTable, String genesTable, String columnName, String aggregator)</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td></tr> </table>

WikiBot https://wiki.biouml.org/index.php?title=Bsa_(host_object)&diff=3598&oldid=prev 2013-05-16T07:57:08Z

<p>Protected &quot;<a href="/index.php/Bsa_(host_object)" title="Bsa (host object)">Bsa (host object)</a>&quot;: Autogenerated page (‎[edit=sysop] (indefinite))</p> <table class='diff diff-contentalign-left'> <tr style='vertical-align: top;'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 07:57, 16 May 2013</td> </tr></table>

WikiBot https://wiki.biouml.org/index.php?title=Bsa_(host_object)&diff=3595&oldid=prev 2013-05-16T07:57:06Z

<p>Host objects added</p> <p><b>New page</b></p><div>;Host object name<br /> :bsa<br /> ;Class<br /> :{{Class|ru.biosoft.bsa.analysis.JavaScriptBSA}}<br /> ;Plugin<br /> :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]<br /> [[Category:Host objects]]<br /> === JavaScript host object ===<br /> ScriptableObject '''bsa'''<br /> <br /> Site search-related analyses<br /> <br /> ==== Functions: ====<br /> <br /> * Track '''MACS'''(Track track, Track controlTrack, String outputPath, boolean fixedLambda, int lambda1, int lambda2, int lambda3, boolean noModel, int shiftSize, int bandWidth, double genomeSize, int enrichmentRatio, int tagSize, double pValue, boolean FDR)<br /> * void '''MACS14'''(Track track, Track controlTrack, String outputPath, Scriptable parameters)<br /> * void '''compareMotifs'''(DataCollection sequences, DataElementPathSet siteModels, String output, Scriptable parameters)<br /> * void '''createIPSModel'''()<br /> * void '''createMatchModel'''()<br /> * void '''createWeightMatrixModel'''()<br /> * void '''filterOneTrackByAnother'''(Track inputTrack, Track filterTrack, String outputPath, Scriptable parameters)<br /> * void '''geneSetSiteSearch'''(DataCollection yesSet, DataCollection noSet, String species, int from, int to, DataCollection profile, String outputPath, boolean optimizeCutoff, boolean optimizeWindow, double pvalueCutoff, boolean overrepresentedOnly)<br /> * void '''optimizeSiteSearchAnalysis'''(Track inYesTrack, Track inNoTrack, String optimizationType, double pvalueCutoff, String outYesTrack, String outNoTrack, boolean overrepresentedOnly, String outSummary)<br /> * void '''processTrack'''(Track source, String sequence, int enlargeStart, int enlargeEnd, boolean mergeOverlapping, int minimalSize, String outputPath)<br /> * Track '''siteSearch'''(DataCollection sequences, DataCollection profile, Track intervals, String outputPath)<br /> * TableDataCollection '''siteSearchSummary'''(Track yesTrack, Track noTrack, boolean overrepresentedOnly, String outputPath)<br /> * void '''snpListToTrack'''(DataCollection source, String species, int fivePrimeSize, int threePrimeSize, boolean outputNonMatched, String outputPath, String annotatedTable, String genesTable, String columnName, String aggregator)<br /> <br /> [[Category:Autogenerated pages]]</div>

WikiBot