https://wiki.biouml.org/index.php?action=history&feed=atom&title=BioumlsimBioumlsim - Revision history2026-04-29T15:27:33ZRevision history for this page on the wikiMediaWiki 1.20.3https://wiki.biouml.org/index.php?title=Bioumlsim&diff=9929&oldid=prevAxec@dote.ru at 12:41, 2 October 20232023-10-02T12:41:28Z<p></p>
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 12:41, 2 October 2023</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  import bioumlsim</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  import bioumlsim</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>  bsim = bioumlsim.<del class="diffchange diffchange-inline">BioUMLSim</del>()    #Here JVM is starting</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>  bsim = bioumlsim.<ins class="diffchange diffchange-inline">Bioumlsim</ins>()    #Here JVM is starting</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  model = bsim.loadTest()          #To load your own model replace it with "model = bsim.load(PATH_TO_SBML)"</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  model = bsim.loadTest()          #To load your own model replace it with "model = bsim.load(PATH_TO_SBML)"</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  result = model.simulate(100,10)  #first argument: completion time, second argument: number of time points</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  result = model.simulate(100,10)  #first argument: completion time, second argument: number of time points</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  bsim.plot(result)                #plot simulation result</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>  bsim.plot(result)                #plot simulation result</div></td></tr>
</table>Axec@dote.ruhttps://wiki.biouml.org/index.php?title=Bioumlsim&diff=9924&oldid=prevAxec@dote.ru: Created page with "bioumlsim is a Python library providing API for BioUML simulation capabilities. Python 3.6. is required! Source code is avaliable at [https://github.com/Biosoft-ru/bioumlsim|..."2023-09-15T12:35:15Z<p>Created page with "bioumlsim is a Python library providing API for BioUML simulation capabilities. Python 3.6. is required! Source code is avaliable at [https://github.com/Biosoft-ru/bioumlsim|..."</p>
<p><b>New page</b></p><div>bioumlsim is a Python library providing API for BioUML simulation capabilities. Python 3.6. is required!<br />
<br />
Source code is avaliable at [https://github.com/Biosoft-ru/bioumlsim| github] and [https://pypi.org/project/bioumlsim/| PYPI].<br />
<br />
It can be installed via pip:<br />
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pip insall bioumlsim<br />
<br />
All neccessary Java libraries are already embedded into library and are downloaded along with python code.<br />
<br />
Demo python code:<br />
<br />
import bioumlsim<br />
bsim = bioumlsim.BioUMLSim() #Here JVM is starting<br />
model = bsim.loadTest() #To load your own model replace it with "model = bsim.load(PATH_TO_SBML)"<br />
result = model.simulate(100,10) #first argument: completion time, second argument: number of time points<br />
bsim.plot(result) #plot simulation result</div>Axec@dote.ru