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Add expression values (analysis) - Revision history
2026-04-13T07:50:32Z
Revision history for this page on the wiki
MediaWiki 1.20.3
https://wiki.biouml.org/index.php?title=Add_expression_values_(analysis)&diff=7791&oldid=prev
WikiBot: Automatic synchronization with BioUML
2019-03-12T09:33:52Z
<p>Automatic synchronization with BioUML</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 09:33, 12 March 2019</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero color''' – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and <nowiki>'</nowiki>Use color for zero<nowiki>'</nowiki> is checked.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero color''' – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and <nowiki>'</nowiki>Use color for zero<nowiki>'</nowiki> is checked.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero level''' – Value at which zero color will be used</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero level''' – Value at which zero color will be used</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Color for not presented''' – Color to represent missed value (when row exists in the table, but value is not a number or empty).</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Gradient fill''' – Use fading gradient aura</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''Use inside fill''' – When checked, inside fill will be used</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''Use inside fill''' – When checked, inside fill will be used</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''Inside filling options''' – Inside filling options</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''Inside filling options''' – Inside filling options</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero color''' – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and <nowiki>'</nowiki>Use color for zero<nowiki>'</nowiki> is checked.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero color''' – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and <nowiki>'</nowiki>Use color for zero<nowiki>'</nowiki> is checked.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero level''' – Value at which zero color will be used</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''Zero level''' – Value at which zero color will be used</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Color for not presented''' – Color to represent missed value (when row exists in the table, but value is not a number or empty).</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''Use p-value stars''' – When checked, a number of stars will be added to matched elements depending on p-value</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''Use p-value stars''' – When checked, a number of stars will be added to matched elements depending on p-value</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''P-value stars options''' – *** options</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>** '''P-value stars options''' – *** options</div></td></tr>
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WikiBot
https://wiki.biouml.org/index.php?title=Add_expression_values_(analysis)&diff=7036&oldid=prev
WikiBot: Automatic synchronization with BioUML
2017-02-13T12:01:13Z
<p>Automatic synchronization with BioUML</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 12:01, 13 February 2017</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''** cutoff''' – If value below this cutoff, two stars are displayed</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''** cutoff''' – If value below this cutoff, two stars are displayed</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''*** cutoff''' – If value below this cutoff, three stars are displayed</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*** '''*** cutoff''' – If value below this cutoff, three stars are displayed</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">** '''Use flux edges''' – When checked, a reaction edges thickness will be changed based on reaction speed data</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">** '''Flux options''' – Flux options</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Column''' – Column to create inside fill</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Minimum value''' – Lowest value in the selected columns</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Maximum value''' – Highest value in the selected columns</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*** '''Maximum stroke width''' – Maximum stroke width</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Output diagram''' – Output diagram</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* '''Output diagram''' – Output diagram</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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WikiBot: Class name added
2013-05-31T04:15:20Z
<p>Class name added</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">;Class</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:{{Class|biouml.plugins.expression.ExpressionFilterAnalysis}}</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Biouml.plugins.expression (plugin)|biouml.plugins.expression (Expression display for diagrams)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Biouml.plugins.expression (plugin)|biouml.plugins.expression (Expression display for diagrams)]]</div></td></tr>
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https://wiki.biouml.org/index.php?title=Add_expression_values_(analysis)&diff=3227&oldid=prev
WikiBot: Protected "Add expression values (analysis)": Autogenerated page ([edit=sysop] (indefinite))
2013-05-15T03:57:44Z
<p>Protected "<a href="/index.php/Add_expression_values_(analysis)" title="Add expression values (analysis)">Add expression values (analysis)</a>": Autogenerated page ([edit=sysop] (indefinite))</p>
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<td colspan='1' style="background-color: white; color:black;">Revision as of 03:57, 15 May 2013</td>
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https://wiki.biouml.org/index.php?title=Add_expression_values_(analysis)&diff=2522&oldid=prev
WikiBot: Link to plugin page
2013-05-07T03:51:53Z
<p>Link to plugin page</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 03:51, 7 May 2013</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Plugin</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:biouml.plugins.expression (Expression display for diagrams)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:<ins class="diffchange diffchange-inline">[[Biouml.plugins.expression (plugin)|</ins>biouml.plugins.expression (Expression display for diagrams)<ins class="diffchange diffchange-inline">]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr>
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WikiBot: Plugin name added
2013-05-06T04:47:53Z
<p>Plugin name added</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">;Plugin</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:biouml.plugins.expression (Expression display for diagrams)</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==== Description ====</div></td></tr>
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WikiBot: Space after icon
2013-04-23T10:03:23Z
<p>Space after icon</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 10:03, 23 April 2013</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:[[File:Molecular-networks-Add-expression-values-icon.png]]Add expression values</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:[[File:Molecular-networks-Add-expression-values-icon.png]] Add expression values</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr>
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WikiBot
https://wiki.biouml.org/index.php?title=Add_expression_values_(analysis)&diff=1704&oldid=prev
WikiBot: Analysis icon added
2013-04-23T09:58:16Z
<p>Analysis icon added</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 09:58, 23 April 2013</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Analysis title</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:Add expression values</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:<ins class="diffchange diffchange-inline">[[File:Molecular-networks-Add-expression-values-icon.png]]</ins>Add expression values</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>;Provider</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:[[Institute of Systems Biology]]</div></td></tr>
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WikiBot: Adding provider-specific categories
2013-04-19T04:08:38Z
<p>Adding provider-specific categories</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 04:08, 19 April 2013</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Analyses]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Molecular networks (analyses group)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Molecular networks (analyses group)]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[Category:ISB analyses]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category:Autogenerated pages]]</div></td></tr>
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WikiBot: Provider information added
2013-04-18T08:43:18Z
<p>Provider information added</p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 08:43, 18 April 2013</td>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">;Analysis title</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:Add expression values</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">;Provider</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">:[[Institute of Systems Biology]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">==== Description ====</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This analysis allows you to display expression values as molecules background on the specified diagram.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This analysis allows you to display expression values as molecules background on the specified diagram.</div></td></tr>
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