Rbiouml

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rbiouml is an R package which allows accessing BioUML server from R script. It's available on CRAN repository.

Main capabilities

  • Retrieving Type-table-icon.png tables from BioUML (including any items which can be represented as tables: Type-profile-icon.png profiles, some kinds of Type-track-icon.png tracks, etc.);
  • Storing Type-table-icon.png tables in BioUML;
  • Listing items in BioUML repository;
  • Launching BioUML analyses;
  • Launching BioUML workflows.

Installation

rbiouml depends on RCurl package that requires libcurl library and header files. On ubuntu install libcurl4-gnutls-dev:

sudo apt-get install libcurl4-gnutls-dev

Use the following R command to install rbiouml:

install.packages("rbiouml")

To update from older version use:

update.packages("rbiouml")

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