Pharmaceutical Compounds analysis

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Analysis title
Default-analysis-icon.png Pharmaceutical Compounds analysis
Provider
Biosoft
Class
PCAnalysis
Plugin
biouml.plugins.genomeenhancer (Genome Enhancer)

Description

Pharmaceutical Compounds analysis

Parameters:

  • Genes table – Path to table with genes
  • Weight column (expert) – Genes' weight column name
  • Diseases names – Names of the diseases, all diseases will be considered if nothing is selected
  • Use known compounds – Flag to show that known compounds should be used.
  • Minimal targets – Minimal targets linked with structure satisfying conditions
  • Use custom targets threshold – Flag to show that targets threshold is enabled. If disabled would be cut off if Pa<Pi
  • Targets threshold (Pm) – Threshold (Pm) to cut off targets with Pa<Pm
  • Toxicities threshold (Pt) – Threshold (Pt) to cut off structures with Pa>Pt for at least one toxicity
  • Use custom diseases threshold – Flag to show that diseases threshold is enabled. If disabled would be cut off if Pa<Pi
  • Diseases threshold (Pb) – Threshold (Pb) to cut off structures with Pa<Pb for all effects which corresponds to selected diseases
  • Output table with structures – Output table with structures
  • Output table with targets – Output table with targets
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