Difference between revisions of "Motif quality analysis"

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;Analysis title
 
;Analysis title
:[[File:BSA-Motif-quality-analysis-icon.png]] Motif quality analysis
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:[[File:Motif-discovery-Motif-quality-analysis-icon.png]] Motif quality analysis
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|ru.biosoft.bsa.analysis.motifquality.MotifQualityAnalysis}}
 
;Plugin
 
;Plugin
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
Compute ROC curve of motif model
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Compute ROC curve of motif model.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Motif discovery (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Motif-discovery-Motif-quality-analysis-icon.png Motif quality analysis
Provider
Institute of Systems Biology
Class
MotifQualityAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Compute ROC curve of motif model.

[edit] Parameters:

  • Sequences – Track or sequence with motifs
  • Site model – Site model
  • Number of points – Number of points where sensitivity and FDR will be computed
  • Shuffle count – How many times seqeunce letters will be shuffled for FDR estimation
  • Seed – Seed for random number generator
  • Output path – Path to store results
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