Difference between revisions of "Motif quality analysis"
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| + | ;Analysis title | ||
| + | :[[File:BSA-Motif-quality-analysis-icon.png]] Motif quality analysis | ||
| + | ;Provider | ||
| + | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.motifquality.MotifQualityAnalysis}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
| + | |||
| + | ==== Description ==== | ||
Compute ROC curve of motif model | Compute ROC curve of motif model | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
[[Category:BSA (analyses group)]] | [[Category:BSA (analyses group)]] | ||
| + | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Revision as of 11:14, 31 May 2013
- Analysis title
Motif quality analysis
- Provider
- Institute of Systems Biology
- Class
MotifQualityAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Compute ROC curve of motif model
Parameters:
- Sequences – Track or sequence with motifs
- Site model – Site model
- Number of points – Number of points where sensitivity and FDR will be computed
- Shuffle count – How many times seqeunce letters will be shuffled for FDR estimation
- Seed – Seed for random number generator
- Output path – Path to store results
