Difference between revisions of "Motif quality analysis"

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:[[Institute of Systems Biology]]
 
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:{{Class|ru.biosoft.bsa.analysis.motifquality.MotifQualityAnalysis}}
 
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]

Revision as of 11:14, 31 May 2013

Analysis title
BSA-Motif-quality-analysis-icon.png Motif quality analysis
Provider
Institute of Systems Biology
Class
MotifQualityAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Compute ROC curve of motif model

Parameters:

  • Sequences – Track or sequence with motifs
  • Site model – Site model
  • Number of points – Number of points where sensitivity and FDR will be computed
  • Shuffle count – How many times seqeunce letters will be shuffled for FDR estimation
  • Seed – Seed for random number generator
  • Output path – Path to store results
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