Difference between revisions of "Motif quality analysis"

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;Analysis title
 
;Analysis title
:[[File:BSA-Motif-quality-analysis-icon.png]] Motif quality analysis
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:[[File:Motif-quality-analysis-icon.png]] Motif quality analysis
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]

Revision as of 12:32, 16 May 2013

Analysis title
File:Motif-quality-analysis-icon.png Motif quality analysis
Provider
Institute of Systems Biology
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Compute ROC curve of motif model

Parameters:

  • Sequences – Track or sequence with motifs
  • Site model – Site model
  • Number of points – Number of points where sensitivity and FDR will be computed
  • Shuffle count – How many times seqeunce letters will be shuffled for FDR estimation
  • Seed – Seed for random number generator
  • Output path – Path to store results
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