Difference between revisions of "Method (extension point)"
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Tagir Valeev (Talk | contribs) |
Tagir Valeev (Talk | contribs) ({{Class}}) |
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;class | ;class | ||
| − | :fully-qualified name of method class. This class must implement ru.biosoft.analysis.AnalysisMethod interface | + | :fully-qualified name of method class. This class must implement {{Class|ru.biosoft.analysis.AnalysisMethod}} interface. |
| − | + | ||
| − | + | ||
;group | ;group | ||
:analysis group (subfolder under <code>analyses/Methods</code>) to place the analysis to. | :analysis group (subfolder under <code>analyses/Methods</code>) to place the analysis to. | ||
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JavaScript analysis implementation will be automatically generated if you perform the following steps: | JavaScript analysis implementation will be automatically generated if you perform the following steps: | ||
| − | * Create JavaScript host object class which extends | + | * Create JavaScript host object class which extends {{Class|ru.biosoft.analysis.javascript.JavaScriptAnalysisHost}}. |
* Register it via [[Host object (extension point)#Host_objects_for_analyses|hostObject]] extension point. | * Register it via [[Host object (extension point)#Host_objects_for_analyses|hostObject]] extension point. | ||
* Add "js" attribute with registered host object name and desired method name separated by point as <code>"siteAnalysis.trackStats"</code> in the example above. | * Add "js" attribute with registered host object name and desired method name separated by point as <code>"siteAnalysis.trackStats"</code> in the example above. | ||
Revision as of 15:54, 13 May 2013
- Identifier
- ru.biosoft.analysis.method
- Plugin
- ru.biosoft.analysis
- Registry
AnalysisMethodRegistry
Description
This extension point allows you to define new analyses method. Analysis methods appear under analyses/Methods path in the repository.
Configuration Markup
<!ELEMENT analysisClass>
<!ATTLIST analysisClass
class CDATA #REQUIRED
group CDATA #REQUIRED
name CDATA #REQUIRED
description CDATA #REQUIRED
js CDATA #IMPLIED
>
- class
- fully-qualified name of method class. This class must implement
AnalysisMethodinterface. - group
- analysis group (subfolder under
analyses/Methods) to place the analysis to. - name
- analysis name
- description
- either textual description or path to method description HTML file.
- js
- name of autogenerated JavaScript function which represents this analysis in the hostObject.function format.
Examples
The following example defines "Track statistics" analysis method:
<extension id="Track statistics" point="ru.biosoft.analysis.method">
<analysisClass
class="ru.biosoft.bsa.analysis.stats.SequenceStatistics"
group="BSA"
name="Track statistics"
description="Gather various statistics about track or FASTQ file"
js="siteAnalysis.trackStats"/>
</extension>
JavaScript implementation
JavaScript analysis implementation will be automatically generated if you perform the following steps:
- Create JavaScript host object class which extends
JavaScriptAnalysisHost. - Register it via hostObject extension point.
- Add "js" attribute with registered host object name and desired method name separated by point as
"siteAnalysis.trackStats"in the example above.
