IPS-scores in SNPs (analysis)

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Analysis title
Default-analysis-icon.png IPS-scores in SNPs
Provider
Institute of Systems Biology
Class
IPSInSNP
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

This analysis calculates IPS-scores in SNPs

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • SNP track – Track containing SNPs (sites must have 'AltAllele' and 'RefAllele' properties)
  • Matrix library – Library containing matrices
  • Output table path – Path to the output table
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