GTRD statistics

From BioUML platform
Revision as of 14:33, 7 August 2013 by BioUML wiki Bot (Talk | contribs)

Jump to: navigation, search

GTRD statistics

2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors

Contents

Experiments by species

GTRD statistics-by-species.png

Control experiments

GTRD statistics-control.png

Experiments by transcription factor

4.07 experiments per transcription factor in average.

284 (60%) transcription factors measured only in one experiment.

Top 10 transcription factors

Transcription Factor ChIP-seq experiments count
CTCF [11] 195
c-Myc 45
Estrogen receptor α (ERα) (NR3A1) 44
REST [1+7+1] (NRSF, XBR) 37
C/EBPβ (NF-IL6-1) 37
GATA-1 (GF-1, EryF1, NF-E1) 33
NF-κB p65 (RelA) 30
Max 30
PU.1 (Spi-1) 29
Glucocorticoid receptor (GR) (NR3C1) 24

ChIP-seq peaks

Total: 5.9515E7
Per experiment in avg.: 32899
Experiments with peaks: 1809

GTRD statistics-peakCounts.png

Alignment

Total: 5.8848E10
Per experiment in avg.: 2.5675E7
Experiments with alignment: 2292

GTRD statistics-alignCounts.png

Raw reads

Total: 8.0808E10
Per experiment in avg.: 3.4937E7
Experiments with alignment: 2313

GTRD statistics-readCounts.png

Percent aligned per experiment distribution

GTRD statistics-percentAligned.png

Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox