Difference between revisions of "GTRD statistics"

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| GATA-1 || 51
 
| GATA-1 || 51
 
|}
 
|}
 
 
=== ChIP-seq peaks ===
 
 
{|
 
|-
 
! align="right"|Total:
 
|5.9515E7
 
|-
 
! align="right"|Per experiment in avg.:
 
|32899
 
|-
 
! align="right"|Experiments with peaks:
 
|1809
 
|}
 
[[File:GTRD statistics-peakCounts.png]]
 
=== Alignment ===
 
 
{|
 
|-
 
! align="right"|Total:
 
|5.8848E10
 
|-
 
! align="right"|Per experiment in avg.:
 
|2.5675E7
 
|-
 
! align="right"|Experiments with alignment:
 
|2292
 
|}
 
[[File:GTRD statistics-alignCounts.png]]
 
=== Raw reads ===
 
 
{|
 
|-
 
! align="right"|Total:
 
|8.0808E10
 
|-
 
! align="right"|Per experiment in avg.:
 
|3.4937E7
 
|-
 
! align="right"|Experiments with alignment:
 
|2313
 
|}
 
[[File:GTRD statistics-readCounts.png]]
 
=== Percent aligned per experiment distribution ===
 
[[File:GTRD statistics-percentAligned.png]]
 
[[Category:Autogenerated pages]]
 

Revision as of 12:40, 27 October 2017

5072 ChIP-seq experiments for 476 human and 257 mouse TFs that correspond to 542 TFClass classes.

Contents

Experiments by species

GTRD statistics-by-species2.png

Control experiments

GTRD statistics-control2.png

Experiments by transcription factor

9.37 experiments per transcription factor in average.

54% of TFs have been measured in more than one experiment.

Top 10 transcription factors

Transcription Factor Number of ChIP-seq experiments
CTCF 282
AR 117
PU.1 103
ERα 92
c-Myc 79
C/EBPβ 74
NF-κB p65 70
GR 53
REST 51
GATA-1 51
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