Difference between revisions of "GTRD statistics"

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GTRD statistics
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'''5072''' ChIP-seq experiments for '''476''' human and '''257''' mouse TFs that correspond to '''542''' TFClass classes.
 
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'''2417''' ChIP-seq experiments for '''470''' distinct sequence specific transcription factors
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=== Experiments by species ===
 
=== Experiments by species ===
[[File:GTRD statistics-by-species.png]]
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[[File:GTRD statistics-by-species2.png|600px]]
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=== Control experiments ===
 
=== Control experiments ===
[[File:GTRD statistics-control.png]]
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[[File:GTRD statistics-control2.png|600px]]
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=== Experiments by transcription factor ===
 
=== Experiments by transcription factor ===
  
'''4.07''' experiments per transcription factor in average.
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'''9.37''' experiments per transcription factor in average.
  
'''284 (60%)''' transcription factors measured only in one experiment.
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54% of TFs have been measured in more than one experiment.
  
 
==== Top 10 transcription factors ====
 
==== Top 10 transcription factors ====
  
{|
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{| class="wikitable"
 
|-
 
|-
!Transcription Factor
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! Transcription Factor !! Number of ChIP-seq experiments
!ChIP-seq experiments count
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|-
 
|-
|CTCF <nowiki>[</nowiki>11<nowiki>]</nowiki>
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| CTCF || 282
|195
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|-
 
|-
|c-Myc
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| AR || 117
|45
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|-
 
|-
|Estrogen receptor α (ERα) (NR3A1)
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| PU.1 || 103
|44
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|-
 
|-
|REST <nowiki>[</nowiki>1+7+1<nowiki>]</nowiki> (NRSF, XBR)
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| ERα || 92
|37
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|-
 
|-
|C/EBPβ (NF-IL6-1)
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| c-Myc || 79
|37
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|-
 
|-
|GATA-1 (GF-1, EryF1, NF-E1)
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| C/EBPβ || 74
|33
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|-
 
|-
|NF-κB p65 (RelA)
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| NF-κB p65 || 70
|30
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|-
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|Max
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|30
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|-
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|PU.1 (Spi-1)
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|29
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|-
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|Glucocorticoid receptor (GR) (NR3C1)
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|24
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|}
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=== ChIP-seq peaks ===
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{|
+
|-
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|Total:
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|5.9515E7
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|-
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|Per experiment in avg.:
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|32899
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|-
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|Experiments with peaks:
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|1809
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|}
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[[File:GTRD statistics-peakCounts.png]]
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=== Alignment ===
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{|
+
|-
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|Total:
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|5.8848E10
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|-
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|Per experiment in avg.:
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|2.5675E7
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|-
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|Experiments with alignment:
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|2292
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|}
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[[File:GTRD statistics-alignCounts.png]]
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=== Raw reads ===
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{|
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|-
 
|-
|Total:
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| GR || 53
|8.0808E10
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|-
 
|-
|Per experiment in avg.:
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| REST || 51
|3.4937E7
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|-
 
|-
|Experiments with alignment:
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| GATA-1 || 51
|2313
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|}
 
|}
[[File:GTRD statistics-readCounts.png]]
 
=== Percent aligned per experiment distribution ===
 
[[File:GTRD statistics-percentAligned.png]]
 
[[Category:Autogenerated pages]]
 

Revision as of 12:40, 27 October 2017

5072 ChIP-seq experiments for 476 human and 257 mouse TFs that correspond to 542 TFClass classes.

Contents

Experiments by species

GTRD statistics-by-species2.png

Control experiments

GTRD statistics-control2.png

Experiments by transcription factor

9.37 experiments per transcription factor in average.

54% of TFs have been measured in more than one experiment.

Top 10 transcription factors

Transcription Factor Number of ChIP-seq experiments
CTCF 282
AR 117
PU.1 103
ERα 92
c-Myc 79
C/EBPβ 74
NF-κB p65 70
GR 53
REST 51
GATA-1 51
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