|
|
| (12 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | GTRD statistics
| + | == Error == |
| | | | |
| − | '''2417''' ChIP-seq experiments for '''470''' distinct sequence specific transcription factors
| + | Cannot retrieve element: databases/GTRD/Data/statistics/index.html |
| | | | |
| − | === Experiments by species ===
| + | Reason: Element not found: databases/GTRD/Data/statistics |
| − | [[File:GTRD statistics-by-species.png]]
| + | |
| − | === Control experiments ===
| + | |
| − | [[File:GTRD statistics-control.png]]
| + | |
| − | === Experiments by transcription factor ===
| + | |
| − | | + | |
| − | '''4.07''' experiments per transcription factor in average.
| + | |
| − | | + | |
| − | '''284 (60%)''' transcription factors measured only in one experiment.
| + | |
| − | | + | |
| − | ==== Top 10 transcription factors ====
| + | |
| − | | + | |
| − | {|
| + | |
| − | |-
| + | |
| − | !Transcription Factor
| + | |
| − | !ChIP-seq experiments count
| + | |
| − | |-
| + | |
| − | ! align="right"|CTCF <nowiki>[</nowiki>11<nowiki>]</nowiki>
| + | |
| − | |195
| + | |
| − | |-
| + | |
| − | ! align="right"|c-Myc
| + | |
| − | |45
| + | |
| − | |-
| + | |
| − | ! align="right"|Estrogen receptor α (ERα) (NR3A1)
| + | |
| − | |44
| + | |
| − | |-
| + | |
| − | ! align="right"|REST <nowiki>[</nowiki>1+7+1<nowiki>]</nowiki> (NRSF, XBR)
| + | |
| − | |37
| + | |
| − | |-
| + | |
| − | ! align="right"|C/EBPβ (NF-IL6-1)
| + | |
| − | |37
| + | |
| − | |-
| + | |
| − | ! align="right"|GATA-1 (GF-1, EryF1, NF-E1)
| + | |
| − | |33
| + | |
| − | |-
| + | |
| − | ! align="right"|NF-κB p65 (RelA)
| + | |
| − | |30
| + | |
| − | |-
| + | |
| − | ! align="right"|Max
| + | |
| − | |30
| + | |
| − | |-
| + | |
| − | ! align="right"|PU.1 (Spi-1)
| + | |
| − | |29
| + | |
| − | |-
| + | |
| − | ! align="right"|Glucocorticoid receptor (GR) (NR3C1)
| + | |
| − | |24
| + | |
| − | |}
| + | |
| − | | + | |
| − | === ChIP-seq peaks ===
| + | |
| − | | + | |
| − | {|
| + | |
| − | |-
| + | |
| − | ! align="right"|Total:
| + | |
| − | |5.9515E7
| + | |
| − | |-
| + | |
| − | ! align="right"|Per experiment in avg.:
| + | |
| − | |32899
| + | |
| − | |-
| + | |
| − | ! align="right"|Experiments with peaks:
| + | |
| − | |1809
| + | |
| − | |}
| + | |
| − | [[File:GTRD statistics-peakCounts.png]]
| + | |
| − | === Alignment ===
| + | |
| − | | + | |
| − | {|
| + | |
| − | |-
| + | |
| − | ! align="right"|Total:
| + | |
| − | |5.8848E10
| + | |
| − | |-
| + | |
| − | ! align="right"|Per experiment in avg.:
| + | |
| − | |2.5675E7
| + | |
| − | |-
| + | |
| − | ! align="right"|Experiments with alignment:
| + | |
| − | |2292
| + | |
| − | |}
| + | |
| − | [[File:GTRD statistics-alignCounts.png]]
| + | |
| − | === Raw reads ===
| + | |
| − | | + | |
| − | {|
| + | |
| − | |-
| + | |
| − | ! align="right"|Total:
| + | |
| − | |8.0808E10
| + | |
| − | |-
| + | |
| − | ! align="right"|Per experiment in avg.:
| + | |
| − | |3.4937E7
| + | |
| − | |-
| + | |
| − | ! align="right"|Experiments with alignment:
| + | |
| − | |2313
| + | |
| − | |}
| + | |
| − | [[File:GTRD statistics-readCounts.png]]
| + | |
| − | === Percent aligned per experiment distribution ===
| + | |
| − | [[File:GTRD statistics-percentAligned.png]]
| + | |
| | [[Category:Autogenerated pages]] | | [[Category:Autogenerated pages]] |
