Difference between revisions of "GTRD statistics"

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(Control experiments)
(Control experiments)
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=== Control experiments ===
 
=== Control experiments ===
[[File:GTRD statistics-control2.png]]
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[[File:GTRD statistics-control2.png|400px]]
  
 
=== Experiments by transcription factor ===
 
=== Experiments by transcription factor ===

Revision as of 17:45, 26 August 2016

5072 ChIP-seq experiments for 476 human and 257 mouse TFs that correspond to 542 TFClass classes.

Contents

Experiments by species

GTRD statistics-by-species2.png

Control experiments

GTRD statistics-control2.png

Experiments by transcription factor

9.37 experiments per transcription factor in average.

54% of TFs have been measured in more than one experiment.

Top 10 transcription factors

Transcription Factor Number of ChIP-seq experiments
CTCF 282
AR 117
PU.1 103
ERα 92
c-Myc 79
C/EBPβ 74
NF-κB p65 70
GR 53
REST 51
GATA-1 51


ChIP-seq peaks

Total: 5.9515E7
Per experiment in avg.: 32899
Experiments with peaks: 1809

GTRD statistics-peakCounts.png

Alignment

Total: 5.8848E10
Per experiment in avg.: 2.5675E7
Experiments with alignment: 2292

GTRD statistics-alignCounts.png

Raw reads

Total: 8.0808E10
Per experiment in avg.: 3.4937E7
Experiments with alignment: 2313

GTRD statistics-readCounts.png

Percent aligned per experiment distribution

GTRD statistics-percentAligned.png

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