Difference between revisions of "GTRD statistics"

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!ChIP-seq experiments count
 
!ChIP-seq experiments count
 
|-
 
|-
|CTCF <nowiki>[</nowiki>11<nowiki>]</nowiki>
+
!CTCF <nowiki>[</nowiki>11<nowiki>]</nowiki>
 
|195
 
|195
 
|-
 
|-
|c-Myc
+
!c-Myc
 
|45
 
|45
 
|-
 
|-
|Estrogen receptor α (ERα) (NR3A1)
+
!Estrogen receptor α (ERα) (NR3A1)
 
|44
 
|44
 
|-
 
|-
|REST <nowiki>[</nowiki>1+7+1<nowiki>]</nowiki> (NRSF, XBR)
+
!REST <nowiki>[</nowiki>1+7+1<nowiki>]</nowiki> (NRSF, XBR)
 
|37
 
|37
 
|-
 
|-
|C/EBPβ (NF-IL6-1)
+
!C/EBPβ (NF-IL6-1)
 
|37
 
|37
 
|-
 
|-
|GATA-1 (GF-1, EryF1, NF-E1)
+
!GATA-1 (GF-1, EryF1, NF-E1)
 
|33
 
|33
 
|-
 
|-
|NF-κB p65 (RelA)
+
!NF-κB p65 (RelA)
 
|30
 
|30
 
|-
 
|-
|Max
+
!Max
 
|30
 
|30
 
|-
 
|-
|PU.1 (Spi-1)
+
!PU.1 (Spi-1)
 
|29
 
|29
 
|-
 
|-
|Glucocorticoid receptor (GR) (NR3C1)
+
!Glucocorticoid receptor (GR) (NR3C1)
 
|24
 
|24
 
|}
 
|}
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{|
 
{|
 
|-
 
|-
|Total:
+
!Total:
 
|5.9515E7
 
|5.9515E7
 
|-
 
|-
|Per experiment in avg.:
+
!Per experiment in avg.:
 
|32899
 
|32899
 
|-
 
|-
|Experiments with peaks:
+
!Experiments with peaks:
 
|1809
 
|1809
 
|}
 
|}
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{|
 
{|
 
|-
 
|-
|Total:
+
!Total:
 
|5.8848E10
 
|5.8848E10
 
|-
 
|-
|Per experiment in avg.:
+
!Per experiment in avg.:
 
|2.5675E7
 
|2.5675E7
 
|-
 
|-
|Experiments with alignment:
+
!Experiments with alignment:
 
|2292
 
|2292
 
|}
 
|}
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{|
 
{|
 
|-
 
|-
|Total:
+
!Total:
 
|8.0808E10
 
|8.0808E10
 
|-
 
|-
|Per experiment in avg.:
+
!Per experiment in avg.:
 
|3.4937E7
 
|3.4937E7
 
|-
 
|-
|Experiments with alignment:
+
!Experiments with alignment:
 
|2313
 
|2313
 
|}
 
|}

Revision as of 14:37, 7 August 2013

GTRD statistics

2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors

Contents

Experiments by species

GTRD statistics-by-species.png

Control experiments

GTRD statistics-control.png

Experiments by transcription factor

4.07 experiments per transcription factor in average.

284 (60%) transcription factors measured only in one experiment.

Top 10 transcription factors

Transcription Factor ChIP-seq experiments count
CTCF [11] 195
c-Myc 45
Estrogen receptor α (ERα) (NR3A1) 44
REST [1+7+1] (NRSF, XBR) 37
C/EBPβ (NF-IL6-1) 37
GATA-1 (GF-1, EryF1, NF-E1) 33
NF-κB p65 (RelA) 30
Max 30
PU.1 (Spi-1) 29
Glucocorticoid receptor (GR) (NR3C1) 24

ChIP-seq peaks

Total: 5.9515E7
Per experiment in avg.: 32899
Experiments with peaks: 1809

GTRD statistics-peakCounts.png

Alignment

Total: 5.8848E10
Per experiment in avg.: 2.5675E7
Experiments with alignment: 2292

GTRD statistics-alignCounts.png

Raw reads

Total: 8.0808E10
Per experiment in avg.: 3.4937E7
Experiments with alignment: 2313

GTRD statistics-readCounts.png

Percent aligned per experiment distribution

GTRD statistics-percentAligned.png

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