Difference between revisions of "Fastq mcf"

From BioUML platform
Jump to: navigation, search
Line 1: Line 1:
=Introduction=
+
==Introduction==
  
 
fastq-mcf attempts to:
 
fastq-mcf attempts to:

Revision as of 17:19, 25 March 2019

Introduction

fastq-mcf attempts to:

  • Detect & remove sequencing adapters and primers
  • Detect limited skewing at the ends of reads and clip
  • Detect poor quality at the ends of reads and clip
  • Detect Ns, and remove from ends
  • Remove reads with CASAVA 'Y' flag (purity filtering)
  • Discard sequences that are too short after all of the above
  • Keep multiple mate-reads in sync while doing all of the above
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox