Cistrom construction (analysis)

Cistrom construction

Option – Please, select option (i.e. select the concrete session of given analysis).
Species – Please, select a taxonomical species
Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
Folders names – Please, select folders names
Type of combined peaks – Please, select type of combined peaks
Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
Maximal length of peaks – All peaks that are longer than this threshold will be truncated
Do perform quality control? – Do perform quality control?
FPCM threshold – FPCM threshold
Site number threshold – If size of a data set is less than this threshold, then data set will be excluded from rank aggregation
Rank aggregation method – Please, select rank aggregation method
Parameters for OPTION_01 – Parameters for OPTION_01
- Path to folder with cell lines – Path to folder with GTRD cell lines
- Cell line – Please, select cell line.
- Do remove cell treatments? – Do remove tracks when cell lines were treated?
Path to output folder – Path to output folder