Cis-module sets near given genes (analysis)

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Analysis title
Default-analysis-icon.png Cis-module sets near given genes
Provider
Institute of Systems Biology
Class
CisModuleSetsNearGenes
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Frequencies of TF-classes in two sets of cis-regulatory modules that locate near given genes

Parameters:

  • Input track – Select input track (it has to contain cis-reulatory modules; in particular, it can be the result of 'Cis-module identification' analysis)
  • Path to table1 with 1-st gene set – Path to table with 1-st gene set (table must contain the 'Gene_ID' column)
  • Path to table2 with 2-nd gene set – Path to table with 2-nd gene set (table must contain the 'Gene_ID' column)
  • Path to table with genes – Path to table with genes
  • Minimal size – Cis-regulatory module will be missed if its size is less than this threshold
  • Maximal distance between cis-modules and genes – Maximal distance between cis-regulatory modules and genes
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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