Category:Model repositories

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The model repositories are resources where modelers can collaborate with each other to build and share models with the rest of the world.

Biological model repositories allows:

  • to reproduce published mathematical models of biological systems
  • reuse them as building blocks for modular construction of more complex models.
Repository, URL, references Number of models, format Brief description

CellML model repository [1]



The CellML Model Repository provides free access to 500+ biological models. The vast majority of these models are derived from published, peer-reviewed papers. Model curation is an important and ongoing process to ensure the CellML model is able to accurately reproduce the published results.

Physiome Repository [2]


CellML, FieldML

The Auckland Physiome Repository provides extensive support for CellML model and related files. Previously it was called the CellML Model Repository, this has since been merged completely along with the FieldML Model Repository into the unified repository. The underlying software is PMR2, which in turn relies on the distributed version control system Mercurial (Hg), which allows the repository to maintain a complete history of all changes made to every file it contains.


Error fetching PMID 21216774:
Error fetching PMID 18658182:
  1. Error fetching PMID 18658182: [Lloyd2008]
  2. Error fetching PMID 21216774: [Yu2011]
All Medline abstracts: PubMed | HubMed

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