Difference between revisions of "BioUML wiki"

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Welcome to BioUML wiki! Now it is the main web site for BioUML platform.
 
Welcome to BioUML wiki! Now it is the main web site for BioUML platform.
  
BioUML is an open source integrated Java platform for building virtual cell and virtual physiological human. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (Eclipse run time from IBM is used) allows to add new functionality using plug-ins.
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BioUML - Biological Universal Modelling Language - is an integrated Java platform for biomedical research. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (OSGI) allows to add new functionality using plug-ins.
  
 
Currently we have '''[[:Special:Statistics|{{NUMBEROFARTICLES}} articles]]'''.
 
Currently we have '''[[:Special:Statistics|{{NUMBEROFARTICLES}} articles]]'''.
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=== Try BioUML web edition ===
 
=== Try BioUML web edition ===
 
* Test server (free)  http://ie.biouml.org/bioumlweb/
 
* Test server (free)  http://ie.biouml.org/bioumlweb/
* Commercial server (free and licensed) http://genexplain-platform.com/bioumlweb/
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* Commercial server (free and licensed) http://platform.genexplain.com/bioumlweb/
 
* '''Server for Colon cancer project''' http://ge.mimomics.it/bioumlweb/
 
* '''Server for Colon cancer project''' http://ge.mimomics.it/bioumlweb/
 
(Colon Cancer Public datasets)
 
(Colon Cancer Public datasets)
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* [[Tests]]
 
* [[Tests]]
 
* [[Presentations]]
 
* [[Presentations]]
* [http://www.biouml.net/vc/agenda.shtml Presentations] (video, slides)  
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* [http://www.biouml.org/vc/agenda.shtml Presentations] (video, slides)  
 
from workshop "From virtual cell to virtual human and virtual patient"
 
from workshop "From virtual cell to virtual human and virtual patient"
  

Revision as of 11:30, 23 August 2018

Welcome to BioUML wiki! Now it is the main web site for BioUML platform.

BioUML - Biological Universal Modelling Language - is an integrated Java platform for biomedical research. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (OSGI) allows to add new functionality using plug-ins.

Currently we have 1,022 articles.

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(Colon Cancer Public datasets) (SysCol project)

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from workshop "From virtual cell to virtual human and virtual patient"

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