Difference between revisions of "BioUML wiki"

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Welcome to BioUML wiki! Now it is the main web site for BioUML platform.
 
Welcome to BioUML wiki! Now it is the main web site for BioUML platform.
  
BioUML is an open source integrated Java platform for building virtual cell and virtual physiological human. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (Eclipse run time from IBM is used) allows to add new functionality using plug-ins.
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BioUML - Biological Universal Modelling Language - is an integrated Java platform for biomedical research. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (OSGI) allows to add new functionality using plug-ins.
  
 
Currently we have '''[[:Special:Statistics|{{NUMBEROFARTICLES}} articles]]'''.
 
Currently we have '''[[:Special:Statistics|{{NUMBEROFARTICLES}} articles]]'''.
 
<center>
 
[http://www.biouml.org/vc2014 '''From virtual cell to virtual human and virtual patient''']
 
 
''International workshop, Novosibirsk, Russia, June 20-22, 2014''
 
 
<font color="red">Don't miss it! A lot of information about BioUML development and it's applications will be presented here.</font>
 
 
''Programming in BioUML, Wolfenbüttel, Germany, March 7, 2014''
 
 
<font color="red">Technical tutorial will be conducted in geneXplain GmbH office (Am Exer 10, Wolfenbüttel, Germany). To participate please contact [mailto:info@genexplain.com info@genexplain.com].</font>
 
</center>
 
 
  
 
{|width="100%"
 
{|width="100%"
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=== Try BioUML web edition ===
 
=== Try BioUML web edition ===
* http://ie.biouml.org/bioumlweb (free)
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* Test server (free)  http://ie.biouml.org/bioumlweb/
* http://platform.genexplain.com (free, commercial)
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* Commercial server (free and licensed) http://platform.genexplain.com/bioumlweb/
 
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* '''Server for Colon cancer project''' http://ge.mimomics.it/bioumlweb/
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(Colon Cancer Public datasets)
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(SysCol project)
  
 
===Miscellaneous===
 
===Miscellaneous===
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== Community ==
 
== Community ==
* [[News]]
 
 
* [http://forum.biouml.org/ Forum]
 
* [http://forum.biouml.org/ Forum]
 
* [[BioStore]]
 
* [[BioStore]]
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* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
* [https://toolserver.org/~diberri/cgi-bin/html2wiki/index.cgi HTML-to-wiki converter]
 
* [https://toolserver.org/~diberri/cgi-bin/html2wiki/index.cgi HTML-to-wiki converter]
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=== Examples ===
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* [[Metabolic control analysis]]
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* [[Quasi-steady-state approximation]]
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* [[Sensitivity analysis]]
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* [[Flux balance analysis]]
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|}
 
|}
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<p align="center">[[Acknowledgements]]</p>
 
<p align="center">[[Acknowledgements]]</p>

Revision as of 21:47, 3 April 2017

Welcome to BioUML wiki! Now it is the main web site for BioUML platform.

BioUML - Biological Universal Modelling Language - is an integrated Java platform for biomedical research. It spans a comprehensive range of capabilities, including access to databases with experimental data, tools for formalized description of biological systems structure and functioning, as well as tools for their visualization, simulation, parameters fitting and analyses. Due to scripts (R, JavaScript) and workflow support it provides powerful possibilities for analyses of high-throughput data. The plug-in based architecture (OSGI) allows to add new functionality using plug-ins.

Currently we have 1,022 articles.

For BioUML users

For administrators/developers


Try BioUML web edition

(Colon Cancer Public datasets) (SysCol project)

Miscellaneous

from workshop "From virtual cell to virtual human and virtual patient"

Community


Editing this wiki

To edit this wiki you have to register in BioStore.

Consult the User's Guide for information on using the wiki software.

Examples


Acknowledgements

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