BioUML development roadmap
This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.
Plans for 2013
| Release | Description | Date |
|---|---|---|
| v. 0.9.5 | SBML level 3 packages:
- hierarchic - FBC test suite Server installation - repository - packages for Red Hat and Debian - Puppet cookbooks for server updates Server - grid version - pilot task manager integration with SGE via DRMAA virtualisation Web interface - mobile version (for web-browser) - web interface improvements diagrams - convenient for exchange and editing NGS - ribo-seq - miRNA - rna-seq Integration with genAbel - pilot |
2013, Q2 |
| v. 0.9.6 | Server
- grid version (alpha) Further NGS analyses improvements Integration with genAbel (beta) SBGN-XML support |
2013, Q3 |
| v. 0.9.7 | Server
- grid version (beta) Further NGS analyses improvements |
2013, Q4 |
Other desired features
| Component | Features | Priority |
|---|---|---|
| Core | Major refactoring: complex, macromolecule state, reaction | moderate |
| Parameters fitting
- optimization process as a workflow - SED-ML as workflow - save optimization results as the diagram state |
moderate | |
| Implementation of OQL subset for access to databases via BioUML object model | moderate | |
| Databases | KEGG improvements:
- omics data visualisation - graph search engine improvements (not include small molecules, search for related maps) - organism - filter and highlighter - visualization of chemical structure for substances - diagram editing - diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG) - set up wizard |
low |
| Misc. | SBRML support | low |
| Further integration with Matlab | low |
