Difference between revisions of "BioUML development roadmap"

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(plans for 2016.4 added)
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|v. 2016.4
 
|v. 2016.4
 
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'''BioUML core'''
+
*Bug fixing
*Fix bugs
+
 
*Analysis
 
*Analysis
**analysis to check parameters identifiability
+
**Parameters identifiability analysis (Raue et al., 2009)
'''BioUML IDE'''
+
**Generating models population using Metropolis algorithm
*update NetBeans version to 8.2
+
*SBML
 +
**Level 2 version 5 supported
 +
**All tests from SBML test suite v. 3.2.0 passed
 +
*BioUML IDE
 +
**NetBeans version updated to 8.2
 
|December
 
|December
 
2016
 
2016

Revision as of 14:22, 11 January 2017

This page describes the current plans for BioUML platform development in 2016 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.

Plans for 2016

Release Description Date
v. 2016.4
  • Bug fixing
  • Analysis
    • Parameters identifiability analysis (Raue et al., 2009)
    • Generating models population using Metropolis algorithm
  • SBML
    • Level 2 version 5 supported
    • All tests from SBML test suite v. 3.2.0 passed
  • BioUML IDE
    • NetBeans version updated to 8.2
December

2016

v. 2016.2
  • Modeling
    • Custom styles for diagram elements rendering for all types of models (see SBGN examples)
    • Automatic detection of model parameter types (Unused, ODE, Algebraic, Descrete, Parameter)
    • Converter: SBML-SBGN diagram -> SBML-SBGN composite diagram
  • Databases
    • CHEBI support enhancement
  • Analysis
    • Flux balance analysis enhancement
July

2016

Other desired features

Component Features Priority
Core
  • Major refactoring: complex, macromolecule state, reaction
  • Parameters fitting - optimization process as a workflow
  • Save optimization results as the diagram state
  • Implementation of OQL subset for access to databases via BioUML object model
moderate
Databases
  • KEGG support improvements:
  • Diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG)
  • Set up wizard
low
Misc.
  • SBRML support
  • Further integration with MATLAB
low

See also

Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox