Difference between revisions of "BioUML development roadmap"
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{| class="wikitable" | {| class="wikitable" | ||
!Release!!Description!!Date | !Release!!Description!!Date | ||
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|v. 0.9.6 | |v. 0.9.6 | ||
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**Synchronisation between textual and graphical model representation (BioNetGen, Antimony) | **Synchronisation between textual and graphical model representation (BioNetGen, Antimony) | ||
*New methods for analysis transcription factor binding sites | *New methods for analysis transcription factor binding sites | ||
| − | |2013, | + | |2013, August |
|- | |- | ||
|v. 0.9.7 | |v. 0.9.7 | ||
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**miRNA | **miRNA | ||
**rna-seq | **rna-seq | ||
| − | *Integration with genAbel | + | *Integration with genAbel |
| − | |2013, | + | |2013, Q4 |
|- | |- | ||
|v. 0.9.8 | |v. 0.9.8 | ||
| | | | ||
*Server | *Server | ||
| − | **grid version | + | **grid version |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
*Further NGS analyses improvements | *Further NGS analyses improvements | ||
|2013, Q4 | |2013, Q4 | ||
|} | |} | ||
</center> | </center> | ||
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===Other desired features=== | ===Other desired features=== | ||
Revision as of 01:54, 15 June 2013
This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.
Plans for 2013
| Release | Description | Date |
|---|---|---|
| v. 0.9.6 |
|
2013, August |
| v. 0.9.7 |
|
2013, Q4 |
| v. 0.9.8 |
|
2013, Q4 |
Other desired features
| Component | Features | Priority |
|---|---|---|
| Core | Major refactoring: complex, macromolecule state, reaction | moderate |
| Parameters fitting
- optimization process as a workflow - SED-ML as workflow - save optimization results as the diagram state |
moderate | |
| Implementation of OQL subset for access to databases via BioUML object model | moderate | |
| Databases | KEGG improvements:
- omics data visualisation - graph search engine improvements (not include small molecules, search for related maps) - organism - filter and highlighter - visualization of chemical structure for substances - diagram editing - diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG) - set up wizard |
low |
| Misc. | SBRML support | low |
| Further integration with Matlab | low |
