Difference between revisions of "BioUML development roadmap"
| Line 15: | Line 15: | ||
**hierarchic | **hierarchic | ||
**FBC test suite | **FBC test suite | ||
| − | |||
|2013, Q2 | |2013, Q2 | ||
|- | |- | ||
|v. 0.9.6 | |v. 0.9.6 | ||
| + | | | ||
| + | *Modelling | ||
| + | **Rule based modelling (implementation of BioNetGen approach) | ||
| + | **Antimony support | ||
| + | **Synchronisation between textual and graphical model representation (NioNetGen, Antimony) | ||
| + | *New methods for analysis transcription factor binding sites | ||
| + | |2013, June | ||
| + | |- | ||
| + | |v. 0.9.7 | ||
| | | | ||
*Server installation | *Server installation | ||
| Line 33: | Line 41: | ||
**rna-seq | **rna-seq | ||
*Integration with genAbel - pilot | *Integration with genAbel - pilot | ||
| − | |2013, | + | |2013, Q3 |
|- | |- | ||
| − | |v. 0.9. | + | |v. 0.9.8 |
| | | | ||
*Server | *Server | ||
| Line 44: | Line 52: | ||
|2013, Q3 | |2013, Q3 | ||
|- | |- | ||
| − | |v. 0.9. | + | |v. 0.9.9 |
| | | | ||
*Server | *Server | ||
Revision as of 23:33, 8 June 2013
This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.
Plans for 2013
| Release | Description | Date |
|---|---|---|
| v. 0.9.5 |
|
2013, Q2 |
| v. 0.9.6 |
|
2013, June |
| v. 0.9.7 |
|
2013, Q3 |
| v. 0.9.8 |
|
2013, Q3 |
| v. 0.9.9 |
|
2013, Q4 |
Other desired features
| Component | Features | Priority |
|---|---|---|
| Core | Major refactoring: complex, macromolecule state, reaction | moderate |
| Parameters fitting
- optimization process as a workflow - SED-ML as workflow - save optimization results as the diagram state |
moderate | |
| Implementation of OQL subset for access to databases via BioUML object model | moderate | |
| Databases | KEGG improvements:
- omics data visualisation - graph search engine improvements (not include small molecules, search for related maps) - organism - filter and highlighter - visualization of chemical structure for substances - diagram editing - diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG) - set up wizard |
low |
| Misc. | SBRML support | low |
| Further integration with Matlab | low |
