Difference between revisions of "BioUML development roadmap"
From BioUML platform
(Created page with " This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and de...") |
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|v. 0.9.5 | |v. 0.9.5 | ||
| − | |SBML level 3 packages: | + | | |
| − | + | *SBML level 3 packages: | |
| − | + | **hierarchic | |
| − | + | **FBC test suite | |
| − | + | *Rule based modelling (implementation of BioNetGen approach) | |
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|2013, Q2 | |2013, Q2 | ||
|- | |- | ||
|v. 0.9.6 | |v. 0.9.6 | ||
| − | | | + | | |
| − | + | *Server installation | |
| − | - grid version ( | + | **repository - packages for Red Hat and Debian |
| − | + | **Puppet cookbooks for server updates | |
| − | + | *Server | |
| − | + | **grid version - pilot task manager integration with SGE via DRMAA virtualisation | |
| − | Integration with genAbel | + | *Web interface |
| − | + | **mobile version (for web-browser) | |
| − | + | **web interface improvements diagrams - convenient for exchange and editing | |
| − | |2013, | + | *NGS |
| + | **ribo-seq | ||
| + | **miRNA | ||
| + | **rna-seq | ||
| + | *Integration with genAbel - pilot | ||
| + | |2013, Q2/3 | ||
|- | |- | ||
|v. 0.9.7 | |v. 0.9.7 | ||
| − | |Server | + | | |
| − | + | *Server | |
| − | - grid version (beta) | + | **grid version (alpha) |
| − | + | *Further NGS analyses improvements | |
| − | Further NGS analyses improvements | + | *Integration with genAbel (beta) |
| + | *SBGN-XML support | ||
| + | |2013, Q3 | ||
| + | |- | ||
| + | |v. 0.9.8 | ||
| + | | | ||
| + | *Server | ||
| + | **grid version (beta) | ||
| + | *Further NGS analyses improvements | ||
|2013, Q4 | |2013, Q4 | ||
|} | |} | ||
Revision as of 21:13, 24 May 2013
This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.
Plans for 2013
| Release | Description | Date |
|---|---|---|
| v. 0.9.5 |
|
2013, Q2 |
| v. 0.9.6 |
|
2013, Q2/3 |
| v. 0.9.7 |
|
2013, Q3 |
| v. 0.9.8 |
|
2013, Q4 |
Other desired features
| Component | Features | Priority |
|---|---|---|
| Core | Major refactoring: complex, macromolecule state, reaction | moderate |
| Parameters fitting
- optimization process as a workflow - SED-ML as workflow - save optimization results as the diagram state |
moderate | |
| Implementation of OQL subset for access to databases via BioUML object model | moderate | |
| Databases | KEGG improvements:
- omics data visualisation - graph search engine improvements (not include small molecules, search for related maps) - organism - filter and highlighter - visualization of chemical structure for substances - diagram editing - diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG) - set up wizard |
low |
| Misc. | SBRML support | low |
| Further integration with Matlab | low |
