BAM filter strand specific (analysis)

Analysis title

BAM filter strand specific

Provider

Institute of Systems Biology

Class

FilterStrandSpecific

Plugin

biouml.plugins.riboseq (RiboSeq Experiment)

Description

Filter strand specific reads in BAM file.

Parameters:

• Input BAM track – BAM track to filter
• Transcript set – Transcript set
  • Annotation source – Source of gene annotation
  • Transcripts annotation track – Track with transcripts annotation in BED format
  • Genome sequence – Collection of chromosomal sequences
  • Ensembl – Ensembl database version
  • Transcript subset – Subset of transcripts used in this analysis
  • GTF file – GTF file
• Enabled (expert) – Enabled
• Output BAM track – Output BAM track